- Lineage disputes: Some question Govindan’s claim to be a direct disciple of Swami Satyeswarananda Giri, citing disagreements over lineage and authority.
- Commercialization: Critics accuse Govindan of commercializing Kriya Yoga, charging high fees for initiations and courses.
- Cultural appropriation: Some argue that Govindan’s teachings and organization water down traditional Indian spirituality for Western audiences.
- Authoritarian leadership: Ex-members and critics have raised concerns about Govindan’s leadership style, citing authoritarianism and suppression of dissent.
- Lawsuits and conflicts: Govindan has been involved in legal disputes with former students and rival organizations over intellectual property and lineage claims.